PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83425.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 333aa    MW: 36888.4 Da    PI: 6.885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
       RWR83425.1 14 RGQWTPEEDTKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding41.72.7e-1368110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ E+ ++v+++   G++ W++Ia  +  gRt++++k++w++
       RWR83425.1  68 GEFSESEEHIIVKLHSVVGNR-WSLIAGQLA-GRTDNDVKNHWNT 110
                      789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MGRIPCCEKD NVKRGQWTPE EDTKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGEF SESEEHIIVK LHSVVGNRWS LIAGQLAGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKRVN FQLQNTAGYE  180
TFPPPGNNPA AGTYISQESE DKDDVIQKIN LSLPHAMSET DNLPPSNNIW PMNGETSDAF  240
TGICSTFPTT AGSFQYGATS YGNNGVGSPW SQSICTGSTC TDGDQQGHGL QERGKDKDRE  300
AEIEKNARKS TTCVFNSDCV LWDLSDDLMN PLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-117MYB family protein