PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83496.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 387aa MW: 42861.1 Da PI: 9.3275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.9e-06	162	184	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F+ +++L+ H+ + H RWR83496.1 162 SCPDCGEKFTKSESLELHQAVrH 184 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MEETMNQTKP TKENQQNQNH HEKLEKPPSW ATVRSIFTCK HLQKAEFIEE KSKRKCKKNE 60 CSGSLCNTKD HKRVMHRPKP SSPEACKKGV PVGACNASSR SMKPPLNGIK RVVDSSSSSS 120 SFGGSFRGMH LSRLSGCYEC HMVVGPRTGA TEDPSLRSTI CSCPDCGEKF TKSESLELHQ 180 AVRHAVSELG TEDTSRNIVE IIFQSSWLKK QAPVCKIDRI LKIHNTQKTI TKFEDYRNTI 240 KSKATNLSKK HPRCVADGNE LLRFHCTTFV CSIGLNGSSS LCNSIPNCNV CNIIRNGFRT 300 NGIKGIFTTA TSGRAHDGAR IPSEEEKRAM LVCRVIAGRV KKKQDLDAVD EFDSVAGLAG 360 VYSNLDELFV FNPKAILPCF VVVYGGF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MEETMNQTKP TKENQQNQNH HEKLEKPPSW ATVRSIFTCK HLQKAEFIEE KSKRKCKKNE  60
CSGSLCNTKD HKRVMHRPKP SSPEACKKGV PVGACNASSR SMKPPLNGIK RVVDSSSSSS  120
SFGGSFRGMH LSRLSGCYEC HMVVGPRTGA TEDPSLRSTI CSCPDCGEKF TKSESLELHQ  180
AVRHAVSELG TEDTSRNIVE IIFQSSWLKK QAPVCKIDRI LKIHNTQKTI TKFEDYRNTI  240
KSKATNLSKK HPRCVADGNE LLRFHCTTFV CSIGLNGSSS LCNSIPNCNV CNIIRNGFRT  300
NGIKGIFTTA TSGRAHDGAR IPSEEEKRAM LVCRVIAGRV KKKQDLDAVD EFDSVAGLAG  360
VYSNLDELFV FNPKAILPCF VVVYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein