PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83743.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 1300aa MW: 144776 Da PI: 8.6025

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00055	1184	1209	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++ F++k +L+ H r+ + RWR83743.1 1184 YQCDveGCSMGFNTKQELMLHKRNiC 1209 99********************9877 PP
2	zf-C2H2	12	0.00064	1267	1293	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H RWR83743.1 1267 YVCRepGCGQTFRFVSDFSRHKRKtgH 1293 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1300 aa Download sequence
MASPSTQDAS PEILPWLKSL PLAPEYHPTL AEFQDPISYI LKIEKEASKF GICKIVPPLP 60 APPKKAAISN LNRSLAARNP HKQPAFTTRQ QQIGFCPRKS RPVQKPVWQS GESYTLQQFE 120 AKAKHFERTH LRKSPKKGLS ALEVESLFWK ATADKPFSVE YANDMPGSAF AAVSMKGGEA 180 AATVAETAWN MRRASRAKGS LLRFMKEEIA GVTSPMVYVA MMFSWFAWHV EDHDLHSLNY 240 LHLGPGKTWY GVPRDAAFAF EEVVRVHGYG GEVNPVVTFA TLGEKTTVMS PEVLIGAGIP 300 CCRLVQNAGE FVVTFPRAYH SGFSHGFNCG EAANIATPEW LRVAKEAAIR RASINYPPMV 360 SHFQLLYSLA STLCSRESMS TSNEPRSSRL KDKKRGEGEM MVKELFVKDV TENNDLLHNL 420 LEKGSSCVLL PRDSLDISLC SNSRIGSQIM VKPRPSLGLC SPEEALEAAG SLLCEDAVLD 480 RNMRFRHVNG LCQRKRIPSV KYGQYASDFL YASTSDSQNM ESEKEGASQV DGLLDQGLFS 540 CVTCGILTFA CVAVIQPTEA AAGYLMSADC NPFGDQIVGL GATNDQIYNV TDVRKNNSDM 600 DTHSGRMEKD DKCGLYDVPV QSADYTIQVS HQRVEPASNS MTQGITSLDL LANAYGDSSD 660 SEEEGIQHPN KSICSDEHDF DDFSLASSED RRVSLFGQDR QYGSVGVLDQ ASPTPGTRYE 720 ASTQILSIND RCPKTLNFSP GNVVDNAVSV KPWGLDSISR NPMTTPGSMV TSRVTDFAMV 780 GHKESDGSWR QCIGTSKISW SDAKMGDPAN CISEGAANGK SIETTLFGDI DSLLKKPNIS 840 YVQQSDKDSS RMHIFCLEHA VEVEKQLRPI GGLHMLLLCH PDYPKVEAQA KSLAEELGIN 900 YHWKDVHFRD ATNDDKEKIR SALDDEEVVP GNGDWAVKLG VNLYYSANLS KSPLYSKQMP 960 YNAVLYKAFG RTSLVSSPTK PKVFARRSSR QKKIVVAGKW CGKVWMSNQV HPYLANRDNP 1020 EQEPVNSSGY CDIDLKLEAD TDVQVERMML SERNLLPCTV LRKSSRKRRK PFEDEDNEKP 1080 KFPKVENTCK VVVDSPRNPS SLSRRILRSR LKHEEMSCSN SSLKDEVGGP STRLRTRPSK 1140 TKEVKAKLKG VKLQPAGERH VIRKKVKKAP SCNDVTIKDE EAEYQCDVEG CSMGFNTKQE 1200 LMLHKRNICS VKGCGKKLFS HKYLVQHRRV HMDDRPLKCP WKGCKMTFKW AWARTEHIRV 1260 HTGARPYVCR EPGCGQTFRF VSDFSRHKRK TGHSVKKGRT

Sequence ? help Back to Top

Protein Sequence Length: 1300 aa Download sequence

MASPSTQDAS PEILPWLKSL PLAPEYHPTL AEFQDPISYI LKIEKEASKF GICKIVPPLP  60
APPKKAAISN LNRSLAARNP HKQPAFTTRQ QQIGFCPRKS RPVQKPVWQS GESYTLQQFE  120
AKAKHFERTH LRKSPKKGLS ALEVESLFWK ATADKPFSVE YANDMPGSAF AAVSMKGGEA  180
AATVAETAWN MRRASRAKGS LLRFMKEEIA GVTSPMVYVA MMFSWFAWHV EDHDLHSLNY  240
LHLGPGKTWY GVPRDAAFAF EEVVRVHGYG GEVNPVVTFA TLGEKTTVMS PEVLIGAGIP  300
CCRLVQNAGE FVVTFPRAYH SGFSHGFNCG EAANIATPEW LRVAKEAAIR RASINYPPMV  360
SHFQLLYSLA STLCSRESMS TSNEPRSSRL KDKKRGEGEM MVKELFVKDV TENNDLLHNL  420
LEKGSSCVLL PRDSLDISLC SNSRIGSQIM VKPRPSLGLC SPEEALEAAG SLLCEDAVLD  480
RNMRFRHVNG LCQRKRIPSV KYGQYASDFL YASTSDSQNM ESEKEGASQV DGLLDQGLFS  540
CVTCGILTFA CVAVIQPTEA AAGYLMSADC NPFGDQIVGL GATNDQIYNV TDVRKNNSDM  600
DTHSGRMEKD DKCGLYDVPV QSADYTIQVS HQRVEPASNS MTQGITSLDL LANAYGDSSD  660
SEEEGIQHPN KSICSDEHDF DDFSLASSED RRVSLFGQDR QYGSVGVLDQ ASPTPGTRYE  720
ASTQILSIND RCPKTLNFSP GNVVDNAVSV KPWGLDSISR NPMTTPGSMV TSRVTDFAMV  780
GHKESDGSWR QCIGTSKISW SDAKMGDPAN CISEGAANGK SIETTLFGDI DSLLKKPNIS  840
YVQQSDKDSS RMHIFCLEHA VEVEKQLRPI GGLHMLLLCH PDYPKVEAQA KSLAEELGIN  900
YHWKDVHFRD ATNDDKEKIR SALDDEEVVP GNGDWAVKLG VNLYYSANLS KSPLYSKQMP  960
YNAVLYKAFG RTSLVSSPTK PKVFARRSSR QKKIVVAGKW CGKVWMSNQV HPYLANRDNP  1020
EQEPVNSSGY CDIDLKLEAD TDVQVERMML SERNLLPCTV LRKSSRKRRK PFEDEDNEKP  1080
KFPKVENTCK VVVDSPRNPS SLSRRILRSR LKHEEMSCSN SSLKDEVGGP STRLRTRPSK  1140
TKEVKAKLKG VKLQPAGERH VIRKKVKKAP SCNDVTIKDE EAEYQCDVEG CSMGFNTKQE  1200
LMLHKRNICS VKGCGKKLFS HKYLVQHRRV HMDDRPLKCP WKGCKMTFKW AWARTEHIRV  1260
HTGARPYVCR EPGCGQTFRF VSDFSRHKRK TGHSVKKGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein