PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83744.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 447aa MW: 50208.4 Da PI: 7.3192

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.7	1.1e-09	80	106	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++rtG C++ +CkF+H++ RWR83744.1 80 PGEPDCVFYLRTGSCRFATNCKFNHPR 106 5789*********************96 PP
2	zf-CCCH	27.9	3.9e-09	152	176	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++ G Ck+G C+++H++ RWR83744.1 152 QQECKYYLKAGGCKFGKACRYNHSR 176 679********************95 PP
3	zf-CCCH	33.3	8e-11	196	221	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++rtG Ck+ +C+F+H+ RWR83744.1 196 PGERECPFYMRTGSCKFAINCRFHHP 221 5789*********************9 PP
4	zf-CCCH	24.3	5.4e-08	344	369	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f+++G+Ck+ + C+++H++ RWR83744.1 344 GQSECQYFMKFGYCKFKSACRYHHPK 369 7899********************96 PP
5	zf-CCCH	22.7	1.7e-07	391	414	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ Ck H+ RWR83744.1 391 QTTCVHYSRYGICKFGPACKHDHP 414 668*****************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEEPQQGNSP KTDEKQELGF SSPSPSPPPP PPPPVDVSDI EKLDLDLQNL WLKEDDWNPR 60 EQVSVPKDEK KRRFSYPIRP GEPDCVFYLR TGSCRFATNC KFNHPRRRKN QVGKDKAKEK 120 EKDEKEKEKE KKEVEVEHEN EEEEEVHEKE GQQECKYYLK AGGCKFGKAC RYNHSREQAG 180 AGEPADLNFL GLPIRPGERE CPFYMRTGSC KFAINCRFHH PDPTAVGGSD PIPVYQNGTS 240 LQVHASAESS PLPAAWALQS TSNEPVPYME ASPQPYPPAM LQPLHGVHPN PEWNTYMGLT 300 SPIFPSERHI QALSASGMND QTKQADSSTR QLHTKVEEFP KKPGQSECQY FMKFGYCKFK 360 SACRYHHPKK RVSKSTACVL SPMGLPLRPD QTTCVHYSRY GICKFGPACK HDHPINSGPL 420 ATPVTPASDR APSLDKSTSE EAGVLTC

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEEPQQGNSP KTDEKQELGF SSPSPSPPPP PPPPVDVSDI EKLDLDLQNL WLKEDDWNPR  60
EQVSVPKDEK KRRFSYPIRP GEPDCVFYLR TGSCRFATNC KFNHPRRRKN QVGKDKAKEK  120
EKDEKEKEKE KKEVEVEHEN EEEEEVHEKE GQQECKYYLK AGGCKFGKAC RYNHSREQAG  180
AGEPADLNFL GLPIRPGERE CPFYMRTGSC KFAINCRFHH PDPTAVGGSD PIPVYQNGTS  240
LQVHASAESS PLPAAWALQS TSNEPVPYME ASPQPYPPAM LQPLHGVHPN PEWNTYMGLT  300
SPIFPSERHI QALSASGMND QTKQADSSTR QLHTKVEEFP KKPGQSECQY FMKFGYCKFK  360
SACRYHHPKK RVSKSTACVL SPMGLPLRPD QTTCVHYSRY GICKFGPACK HDHPINSGPL  420
ATPVTPASDR APSLDKSTSE EAGVLTC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	109	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-92	C3H family protein