PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83889.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 427aa    MW: 48156.4 Da    PI: 5.0779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.45.5e-100574263374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lLlecA+a++++d +++++lL+ l+elasp+gd  q+la++f++AL  + ++s++++yk+l++ +++  + +++ ++   f+evsP+ +f+h++ N a
  RWR83889.1  57 RLLLECAKAITEKDSSRIHHLLWMLNELASPYGDCEQKLASHFLQALFCKATESGERCYKTLASVAEKGCSFESARKVILKFQEVSPWTTFGHVASNGA 155
                 79************************************************************9999985554444445455****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpg 199
                 Ilea+ege+++HiiD++ + ++QWp+Ll++La+R++++p+lR+T+v+  e   +  ++e+g+r++kfA+ +gvpfef+v++   rl++l+ eeL + ++
  RWR83889.1 156 ILEAFEGESKLHIIDISNTLCTQWPTLLETLATRNDETPRLRLTVVVT-EGMGRSVMREVGQRMEKFARLMGVPFEFHVVIGLaRLAELTEEELGLGED 253
                 ************************************************.556999************************96555*************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 Ea+aVn+v +l +++     +e er +++++++sl+Pkvv+vve ead   ++++F++ f e+l++ys  f++le+++ ++s+er  +Er+  +r+i +
  RWR83889.1 254 EAVAVNCVGSLCQVP-----TE-ERGAFVHMLRSLRPKVVTVVEDEADFtsTRGDFAKCFEECLRFYSLYFEMLEESFVPTSNERLLLERK-CSRSILS 345
                 **************9.....44.4899*******************999545669************************************.89***** PP

        GRAS 297 vvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                 v+ac g+     er+e+ ++W erl+e GF+pv++s+++++++k+ll+++  ++ +     ++  l+l+Wk++++ +vSaW+
  RWR83889.1 346 VLACDGDGggECERRERGSQWCERLRE-GFSPVRYSDDVVDDVKALLKRYRtGWSFVPAqGDDSGLYLTWKEEAVAWVSAWK 426
                 *****99766899************86.***********************7666655426677888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MDTTLYAPKL SHFFYSNQQE HDQVNMQNSS QSQSNHTSSS RSSDSIDPNT NGKWAARLLL  60
ECAKAITEKD SSRIHHLLWM LNELASPYGD CEQKLASHFL QALFCKATES GERCYKTLAS  120
VAEKGCSFES ARKVILKFQE VSPWTTFGHV ASNGAILEAF EGESKLHIID ISNTLCTQWP  180
TLLETLATRN DETPRLRLTV VVTEGMGRSV MREVGQRMEK FARLMGVPFE FHVVIGLARL  240
AELTEEELGL GEDEAVAVNC VGSLCQVPTE ERGAFVHMLR SLRPKVVTVV EDEADFTSTR  300
GDFAKCFEEC LRFYSLYFEM LEESFVPTSN ERLLLERKCS RSILSVLACD GDGGGECERR  360
ERGSQWCERL REGFSPVRYS DDVVDDVKAL LKRYRTGWSF VPAQGDDSGL YLTWKEEAVA  420
WVSAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-126GRAS family protein