PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83933.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 185aa MW: 20538.6 Da PI: 7.8243

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.9	4.1e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv+apyfp +qp+kf nvhk+FGasnv+kll++l++++reda++sl+yeAe+r+rdPvyG+v+vi+ lq+ql+ql+ +l+ +k+ RWR83933.1 8 PCAACKFLRRKCLPECVFAPYFPPDQPQKFVNVHKVFGASNVTKLLNDLHPNQREDAVTSLAYEAEMRLRDPVYGCVSVISLLQHQLRQLQMDLSCAKS 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e RWR83933.1 107 E 107 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MATSSISPCA ACKFLRRKCL PECVFAPYFP PDQPQKFVNV HKVFGASNVT KLLNDLHPNQ 60 REDAVTSLAY EAEMRLRDPV YGCVSVISLL QHQLRQLQMD LSCAKSELSK YQNVGISGHG 120 LISTANGPMS ISLSRNQFFT WEQQMMVRNY DNEMARLSAN GAYDASLLAM NVSASIGPLD 180 QIPHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	1e-65	LBD family protein