PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR84271.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GATA
Protein Properties Length: 361aa    MW: 39099.7 Da    PI: 6.884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR84271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19.1e-17272308135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp++Rrgpdg++tLCnaCGl++  kg+
  RWR84271.1 272 CHHCGISQkaTPMMRRGPDGPRTLCNACGLFWSNKGT 308
                 *******99************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MGENNSNNNN VDVKIQAIQA VQAVQVQGHP QIHVVSADHV HMLAAAAAMS MPGQIDDGQV  60
GVGSVEPTPI QVVDAQPIHV HYMQASDAGM EEDGDDGGGS EGMEGDMPPE QQQVGVVTRS  120
QVANQLTLSF QGEVYVFDSV PPEKVQAVLL LLGGREVPTT IPAIQSHQNN RLHDVCQNTN  180
MPQRVASLMR FREKRKERNF DKKVRYSVRK EVALRMHRYK GQFASKAQIE EAQAQEAAAK  240
AAAAAAVSAT SYGSNTRWIP VHNETPPKAS ACHHCGISQK ATPMMRRGPD GPRTLCNACG  300
LFWSNKGTLR DLSKHQQTQA QVQAQNPSRN LTVEIETEAD ANQSNNVVAM QVNAANGHQA  360
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-74GATA family protein