PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84600.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 540aa MW: 59229.1 Da PI: 7.1303

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ RWR84600.1 62 RERWTEEEHKKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 106 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MAVQGGEICY NSGQVLVPTP TNCMHLDNGK SFQTGVQPKE LYSSGDEVIP KARKPYTITK 60 QRERWTEEEH KKFLEALKLY GRAWRRIEEH IGTKTAVQIR SHAQKFFSKV VRESNTNTDS 120 IPMKSIEIPP PRPKRKPLHP YPRKLVHHSA KGLSVCEQPE RSSSPIASIY EQENRSPSSV 180 LSAIESDTME STVSNPSNHC SSPVSSATGP FPMGFLVEKQ ENISSSTTSL VEKDGISPSP 240 AQASTGSSQQ DKASMELDMG CKDHDSAKEA SSVDVPTMSL KLFGRTVLVT DSHRPSSPIA 300 GDILQHCKSS PLIDSENKQE GAVQDQAQSS PRNTVQRDFS LHQCQSGWNP WPCEISPLYY 360 CMQFRQGDYS AEASSPMPWW AVCSSLPLPP LHFNGTPSRG TPSESCVQAS DGKESEKEGF 420 STSANNGSVK EVESGDGNCD PVDSQNNDKV KEPIAVVCLK ASENVAFPTQ KARSSGNDKG 480 QAAVFCLKPS ENSAFSSRPV GSQYFGKGFV PYKRCVTERD IQQPHIGSDE REGQRIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MAVQGGEICY NSGQVLVPTP TNCMHLDNGK SFQTGVQPKE LYSSGDEVIP KARKPYTITK  60
QRERWTEEEH KKFLEALKLY GRAWRRIEEH IGTKTAVQIR SHAQKFFSKV VRESNTNTDS  120
IPMKSIEIPP PRPKRKPLHP YPRKLVHHSA KGLSVCEQPE RSSSPIASIY EQENRSPSSV  180
LSAIESDTME STVSNPSNHC SSPVSSATGP FPMGFLVEKQ ENISSSTTSL VEKDGISPSP  240
AQASTGSSQQ DKASMELDMG CKDHDSAKEA SSVDVPTMSL KLFGRTVLVT DSHRPSSPIA  300
GDILQHCKSS PLIDSENKQE GAVQDQAQSS PRNTVQRDFS LHQCQSGWNP WPCEISPLYY  360
CMQFRQGDYS AEASSPMPWW AVCSSLPLPP LHFNGTPSRG TPSESCVQAS DGKESEKEGF  420
STSANNGSVK EVESGDGNCD PVDSQNNDKV KEPIAVVCLK ASENVAFPTQ KARSSGNDKG  480
QAAVFCLKPS ENSAFSSRPV GSQYFGKGFV PYKRCVTERD IQQPHIGSDE REGQRIRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-42	MYB_related family protein