PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84698.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 200aa MW: 22621.4 Da PI: 7.442

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.2	6.1e-25	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr+g+lKKA+ELSvLCda++ ++ifs++gklye + RWR84698.1 10 RIENPVHRQVTFCKRRAGLLKKANELSVLCDADIGLMIFSTHGKLYELA 58 8*********************************************965 PP
2	K-box	58.3	3.2e-20	90	173	17	100
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l+qe+ Lk+eie Lq+ + + G ++++L+l+eL+ Le+qLe +++iRs K+e+++++i+ l+kke l +n+ L+ k+ee RWR84698.1 90 LKQEILMLKQEIELLQKGLSYISGGEMGTLTLNELHALERQLEIWMREIRSAKMEIMCQEIQLLKKKEGILIAANEFLQGKIEE 173 68*******************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MARGKIQMRR IENPVHRQVT FCKRRAGLLK KANELSVLCD ADIGLMIFST HGKLYELATN 60 GRSMEGLIER YRKASGGDEV GGEGNPPPGL KQEILMLKQE IELLQKGLSY ISGGEMGTLT 120 LNELHALERQ LEIWMREIRS AKMEIMCQEI QLLKKKEGIL IAANEFLQGK IEEQNGIFNV 180 PPILTEIPQS LTIQNEIFQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	2e-67	MIKC_MADS family protein