PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85055.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 217aa MW: 24586.7 Da PI: 7.8809

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	27.6	7.2e-09	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk+F+r+ nL+ H+r H RWR85055.1 32 FACEICGKTFPRRQNLQLHLRGH 54 78*******************98 PP
2	zf-C2H2	12.9	0.00033	162	181	3	22
ETTTTEEESSHHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHirt 22 C dCg sFsrk++++ H RWR85055.1 162 CCDCGVSFSRKDDFTAHRTF 181 *****************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MPKKRILLET PDPDAVEVIS LSPNSLTATD QFACEICGKT FPRRQNLQLH LRGHNRLLKR 60 RLQPEEEGDD GDEEEEHHHH QQQQQQQVPG TEEPRKRIYV CPEPSCVNNS PSWGFGHITA 120 VKRHFCRKHG EKKWKCSKCS KEYAVEADWK AHSKTCGINE HCCDCGVSFS RKDDFTAHRT 180 FCDALPAAGS SSLSSDVVSG VLPLQHRVLS VSKGYRM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	61	RLLKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-48	C2H2 family protein