PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85335.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 259aa    MW: 28016.9 Da    PI: 8.1481
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.14.4e-314107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C ++p++     p++q++++ +++k++G++ +++ll+a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+
  RWR85335.1   4 SCNGCRVLRKGCSDTCSIRPCLdwiqnPESQANATLFLAKFYGRAGLMNLLSAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEA 102
                 6************************************************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  RWR85335.1 103 VLDGK 107
                 87665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MKMSCNGCRV LRKGCSDTCS IRPCLDWIQN PESQANATLF LAKFYGRAGL MNLLSAGPEH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLDGKPIV QATTDSPPIT  120
GPPAKAYDIR HVSKKENSVI QELHRVKARG RFKEPNSRLD SAVDRFSKPG ERNCRGPSRD  180
SSLTHETESG SSVEAALVGR AEPSSRADAE LELELRLGIG RVSQEGPVHA MGNVAKLGDL  240
DQLDAYTCNA QLGLQLSGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-80LBD family protein