PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85346.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 302aa    MW: 34779.2 Da    PI: 7.4052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed ll+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
       RWR85346.1 20 RGPWTLDEDTLLIHYIACHGEGRWNLAARSSGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding50.35.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ +++++ ++G++ W++Ia+ ++ gRt++++k++w++
       RWR85346.1  73 RGNLTPEEQLVILELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MSSATKRGCK QDEEDTELRR GPWTLDEDTL LIHYIACHGE GRWNLAARSS GLKRTGKSCR  60
LRWLNYLKPD VKRGNLTPEE QLVILELHSK WGNRWSKIAQ QLPGRTDNEI KNYWRTRVQK  120
QARQLKIDAN SSRFKDMIRL LWMPRLLEKM TSPPSIQSLN PTSTLLNFVP QSYPSPPELL  180
SASEQNTVTT SCYSHKSFSE NCSPSISSNS MNTTQLPQIS EFPTSPKDFG NIDHTQLLKE  240
YCYVDESFDL EDLHLSSTST AALNYPTSDF SMTQNICVDD MVDSLWNMDE LWQFRKLQGR  300
CI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-80MYB family protein