PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85535.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 452aa    MW: 51147.3 Da    PI: 6.1114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.12.3e-98724491373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl  A+av++++  la + L++l + ++ +gd++qR+aayf+ +Laarl+   s  y+ +   +t+    +ee+aa++ ++ +sP+++f+h+taN
  RWR85535.1  72 LIHLLLVLATAVDEKKVGLAAENLSELYKCVALNGDSIQRVAAYFADGLAARLLTRRSPFYDMIMKPPTT----DEEFAAFTELYRASPYYQFAHFTAN 166
                 689****************************************************9999**988777775....79999999***************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledl 189
                 qaI ea+e+e     + +H+iDfd+s+G+QWp+L+q+L++++   +   slRiTg g+    s +el et+ rLa+fA+ + +++fef+ l    l   
  RWR85535.1 167 QAIFEAFEEEeehnsRSLHVIDFDVSYGFQWPSLIQSLSEKAtssSCRISLRITGYGR----SLDELIETETRLASFAKGChNLDFEFEGL----LRGS 257
                 ********9987777789***********************95423345*********....9***************98648*******8....8888 PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 ++ +L v+++E+++Vnlvl lh+l  +  +    ++e+Lk v sl+P +v++veqe +++++sFl rf+e+l+y++a+fdsl+  lp++s er  +E+ 
  RWR85535.1 258 KPISLCVRKKETVVVNLVLYLHTLT-SAWQ----ISETLKSVYSLNPSLVILVEQEGSRSNPSFLSRFMESLHYFAAMFDSLDDCLPPDSVERLCIEKN 351
                 999*********************8.3333....457************************************************************** PP

        GRAS 289 llgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr......kvksdg....yrveeesg..slvlgWkdrpLvsvSaW 373
                  +g+ei+++v ce  e    r e+le+W++r+e+ GF+ v+ls++  +qaklll+      + ++dg    ++v e++g   l lgW+dr L+++SaW
  RWR85535.1 352 HFGKEIKDMVNCERGEeCHLRYERLETWKDRMESIGFQGVSLSSRSLSQAKLLLKirshcsQLEFDGgcggFKVVERDGgrGLSLGWQDRYLITASAW 449
                 ************96653788*********************************9833322222333345559988886522567************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MQDTEEEFLN LRLSIIDTGG GKKRKRREDL NPCTQLGGDE GKKLIAFLQL RDQMLKLDPK  60
QGGVEKGKGL HLIHLLLVLA TAVDEKKVGL AAENLSELYK CVALNGDSIQ RVAAYFADGL  120
AARLLTRRSP FYDMIMKPPT TDEEFAAFTE LYRASPYYQF AHFTANQAIF EAFEEEEEHN  180
SRSLHVIDFD VSYGFQWPSL IQSLSEKATS SSCRISLRIT GYGRSLDELI ETETRLASFA  240
KGCHNLDFEF EGLLRGSKPI SLCVRKKETV VVNLVLYLHT LTSAWQISET LKSVYSLNPS  300
LVILVEQEGS RSNPSFLSRF MESLHYFAAM FDSLDDCLPP DSVERLCIEK NHFGKEIKDM  360
VNCERGEECH LRYERLETWK DRMESIGFQG VSLSSRSLSQ AKLLLKIRSH CSQLEFDGGC  420
GGFKVVERDG GRGLSLGWQD RYLITASAWH CQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.14e-56GRAS family protein