PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85553.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 229aa MW: 25689 Da PI: 8.3985

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.8e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g W+t + g+ R++k+c++rw +yl RWR85553.1 13 KGAWSKQEDQKLIDYIRVHGEGGWRTLPLAAGLLRCGKSCRLRWINYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	52.3	1.3e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l RWR85553.1 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRV HGEGGWRTLP LAAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LKRKLINMGV 120 DPNNHRMSRT FPSHQQKNGT SSATSSGSKS QVCQPCQLPK SNGENDQMSD AASCLDDDKC 180 TLPDLNLDLT ISVSAPPLET ASERPQSQES KLVPSGIEDA NYPTLVLFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-75	MYB family protein