PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85611.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 23729.9 Da PI: 8.3871

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	61	115	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA +l+L+ rqV vWFqNrRa+ k RWR85611.1 61 RKKLRLTKEQSRSLEESFRENQTLTPKQKEALALELKLKPRQVEVWFQNRRARTK 115 78889************************************************98 PP
2	HD-ZIP_I/II	120.1	1.1e-38	61	150	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+++LEesF+e+++L+p++K++la eL+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr +l RWR85611.1 61 RKKLRLTKEQSRSLEESFRENQTLTPKQKEALALELKLKPRQVEVWFQNRRARTKLKQTEVECEHLKRCFGSLTEENRRLQREVEELR-AL 150 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGTLPTSSSS NSLELTMAPP ASDGVSCMRD LDINQVPSSD ADTWAAGIID EDEDNRTGPP 60 RKKLRLTKEQ SRSLEESFRE NQTLTPKQKE ALALELKLKP RQVEVWFQNR RARTKLKQTE 120 VECEHLKRCF GSLTEENRRL QREVEELRAL KVAPPTFLSP HTCEPLPAST LTMCPRCERV 180 TTTTNPSHLA SFSSSKSPVL RPTRQPTSAA W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-58	HD-ZIP family protein