PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85623.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GATA
Protein Properties Length: 172aa    MW: 19572.8 Da    PI: 10.3779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-1986119134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C+ C+t++TplWR+gp g+k+LCnaCG++yrk++
  RWR85623.1  86 CTDCNTSETPLWRSGPAGPKSLCNACGIRYRKRR 119
                 ********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MFSATDSISD PLKQSQHAHD HQDHHYLQDI PQSKSGLDGK RPIKVLANGH EEMKRLLKVV  60
RRRRRPTKEK VGVEICKADG VVLRVCTDCN TSETPLWRSG PAGPKSLCNA CGIRYRKRRR  120
GILDLHDLGR NVWMKKKKSQ EKVLFLLQRK LEEDAEAAVL LMALSCGLFV HT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2116138RKRRRGILDLHDLGRNVWMKKKK
3117142KRRRGILDLHDLGRNVWMKKKKSQEK
4117139RKRRRGILDLHDLGRNVWMKKKK
5118140RKRRRGILDLHDLGRNVWMKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-21GATA family protein