PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85752.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 415aa MW: 47301.8 Da PI: 5.3539

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.2e-08	16	45	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+ Ed +lv ++ ++G g+W++ ++ RWR85752.1 16 KGPWTPAEDTRLVTYISKYGHGNWRALPKQ 45 79***********************98876 PP
2	Myb_DNA-binding	56.9	4.9e-18	98	143	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++qlG++ W++Ia++++ gRt++++k+ w+++l RWR85752.1 98 RGNFSQEEEETIIKLHRQLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 143 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGRGRAPCCD KVGLKKGPWT PAEDTRLVTY ISKYGHGNWR ALPKQAVLMN NSVFKLLNLN 60 YLQFKEAKMR LMNVTGLLRC GKSCRLRWIN YLRPDIKRGN FSQEEEETII KLHRQLGNKW 120 SKIASCLPGR TDNEIKNVWN THLKKRSVSK GSNPSNPCIA ESKGLPNSSS SDSISSLSHS 180 NQGIGGTGDE EQEHPTFKSE IPPAESNKEQ LENMHSTLED IFQLPLDEQS MEIWDMLDES 240 KKASSPSTSA CSSYITCSNQ VDAKEAEDKM HSLFKSKSPN DDEHDHDMIH IETKEEPPKE 300 ILEIPYEPDR DFWDMLDDDF CSSSCSGGVF DGLESHINAA INEDRIGEVD YRRLRHFENE 360 LELWMMGNDH HKSLMKTEIE PLNPSSTDDE NENKVPHDSI KYFQTWPQSP FTFSS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGRGRAPCCD KVGLKKGPWT PAEDTRLVTY ISKYGHGNWR ALPKQAVLMN NSVFKLLNLN  60
YLQFKEAKMR LMNVTGLLRC GKSCRLRWIN YLRPDIKRGN FSQEEEETII KLHRQLGNKW  120
SKIASCLPGR TDNEIKNVWN THLKKRSVSK GSNPSNPCIA ESKGLPNSSS SDSISSLSHS  180
NQGIGGTGDE EQEHPTFKSE IPPAESNKEQ LENMHSTLED IFQLPLDEQS MEIWDMLDES  240
KKASSPSTSA CSSYITCSNQ VDAKEAEDKM HSLFKSKSPN DDEHDHDMIH IETKEEPPKE  300
ILEIPYEPDR DFWDMLDDDF CSSSCSGGVF DGLESHINAA INEDRIGEVD YRRLRHFENE  360
LELWMMGNDH HKSLMKTEIE PLNPSSTDDE NENKVPHDSI KYFQTWPQSP FTFSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	1e-64	MYB family protein