PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85794.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 658aa MW: 73108.3 Da PI: 8.8969

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.3	4.3e-16	473	519	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq RWR85794.1 473 VHNLSERRRRDRINEKMKALQELIPHS-----SKSDKASMLDEAIEYLKSLQ 519 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MIFSSQYNEV GHGLQPFTSA GRNQCSMPLI GDREDACSSQ VSSSYVHTTF AKFIVVGICK 60 YHVINSVIQN AISVRTKDSG HRDYRKSFTR LHFFSYKSTT TTRRRRRRRR RALGQGEEKF 120 LHRTMNHCVP DWSLEDSARP FTDLLPVSNH NKFMGPEQEL AELLWRNGQV FLSSQNHRRP 180 ILIPNESKHI DKPEELLKGG GSLGNSSNLI QEDETASWLQ YTLDEPIEKE FCSALYEIPT 240 VDGITDANKS NKEVVGKGEK YVNFGASDVP NVLVISGSIK ERPVFEHCSN LNYAENTMPP 300 PKSQVPQLIP QAFNSGAGRM ANFSHFSRPK KGSLLSPNDL LGKGVSGNVI QGDVGGSSMM 360 SICGSNQVGD EPNLNPVSSN SFGAAEDDRK MPFLHERRQV GALEQTITSS SGGSRGSLGR 420 TSKETASNQS LKRKSRDVDE SECQSEDTEY ESVEASKPAK RSASARRRRA AEVHNLSERR 480 RRDRINEKMK ALQELIPHSS KSDKASMLDE AIEYLKSLQL QVQMMWMGSG MTPMMFPGVQ 540 HYMSPMSMGV GHGPIHSPMQ FPRVPLIDQT ITSSLAPNRP PMCPAPVISP VNFQNQIQNA 600 CTPESYARYL GFHPIQTVPQ AMNLFTYGSQ RMQHGQRIAP PDTSGGPNEV LSNSIQNG

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MIFSSQYNEV GHGLQPFTSA GRNQCSMPLI GDREDACSSQ VSSSYVHTTF AKFIVVGICK  60
YHVINSVIQN AISVRTKDSG HRDYRKSFTR LHFFSYKSTT TTRRRRRRRR RALGQGEEKF  120
LHRTMNHCVP DWSLEDSARP FTDLLPVSNH NKFMGPEQEL AELLWRNGQV FLSSQNHRRP  180
ILIPNESKHI DKPEELLKGG GSLGNSSNLI QEDETASWLQ YTLDEPIEKE FCSALYEIPT  240
VDGITDANKS NKEVVGKGEK YVNFGASDVP NVLVISGSIK ERPVFEHCSN LNYAENTMPP  300
PKSQVPQLIP QAFNSGAGRM ANFSHFSRPK KGSLLSPNDL LGKGVSGNVI QGDVGGSSMM  360
SICGSNQVGD EPNLNPVSSN SFGAAEDDRK MPFLHERRQV GALEQTITSS SGGSRGSLGR  420
TSKETASNQS LKRKSRDVDE SECQSEDTEY ESVEASKPAK RSASARRRRA AEVHNLSERR  480
RRDRINEKMK ALQELIPHSS KSDKASMLDE AIEYLKSLQL QVQMMWMGSG MTPMMFPGVQ  540
HYMSPMSMGV GHGPIHSPMQ FPRVPLIDQT ITSSLAPNRP PMCPAPVISP VNFQNQIQNA  600
CTPESYARYL GFHPIQTVPQ AMNLFTYGSQ RMQHGQRIAP PDTSGGPNEV LSNSIQNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	RRRRRR
2	103	109	RRRRRRR
3	103	110	RRRRRRRR
4	103	111	RRRRRRRRR
5	104	109	RRRRRR
6	104	110	RRRRRRR
7	104	111	RRRRRRRR
8	104	112	RRRRRRRRR
9	105	110	RRRRRR
10	105	111	RRRRRRR
11	105	112	RRRRRRRR
12	105	113	RRRRRRRRR
13	106	111	RRRRRR
14	466	482	RRRRAAEVHNLSERRRR
15	467	483	RRRRAAEVHNLSERRRR
16	478	483	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	3e-30	bHLH family protein