PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85802.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LSD

Protein Properties

Length: 214aa MW: 22835.5 Da PI: 8.4957

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	48.3	1.6e-15	50	74	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsVRCa+C+t+ RWR85802.1 50 CSGCRNMLLYPRGAPSVRCAVCQTI 74 ***********************97 PP
2	zf-LSD1	48.5	1.4e-15	85	109	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+rGA+sVRC++C+tV RWR85802.1 85 CGGCGTLLMYTRGATSVRCSCCQTV 109 ************************9 PP
3	zf-LSD1	47.5	2.9e-15	123	147	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V RWR85802.1 123 CGHCRTTLMYPYGAPSVKCAVCQYV 147 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MWEASKEETV DLNLASIQQK LGHRLSDSFI GFRILLVIDS LHLSKSQLVC SGCRNMLLYP 60 RGAPSVRCAV CQTITPGMEM SHLVCGGCGT LLMYTRGATS VRCSCCQTVN HARAANQVAQ 120 VNCGHCRTTL MYPYGAPSVK CAVCQYVTNV GMNNMWVPAP VHGPNGTTPA SLPSTSAPVP 180 HAKNQTVVVE NPMTVDESGK LVSNVVVGVT NGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-70	LSD family protein