PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85840.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 888aa    MW: 98586.2 Da    PI: 6.6419
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23142243199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  RWR85840.1 142 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 236
                 99*****************************8544444..48************************************************..8889999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  RWR85840.1 237 LLGIRRA 243
                 ***9986 PP
2Auxin_resp117.98.1e-39268351183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ k+++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  RWR85840.1 268 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKTVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 351
                 79********************************99789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    
MKISSSGFTH QMQEDNLHLR LSLTMEHFTG EKGCVDSELW HACAGPLISL PAVGSHVVYF  60
PQGHSEQVTA STNKEVDADI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPQ  120
EQKEAYLPAE LGNLSKQPTN YFCKILTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ  180
ELIARDLHNN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI  240
RRAVRPQTVM PSSVLSCDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYIK  300
TVYHTRVSVG MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWSNSHWRSV KVGWDESTGG  360
EKQPRVSLWE IEPLTTFPMY PSTFPLGLKR PWPSGLPSLH GASGAKGGEL GLNSPLMWLR  420
DGGNLGIQSL NFQGIGVTPW KQPRLDTSLL DLQSDVYQAM AAAALQEIKS VDSWKQLSPS  480
LLQFQQTQNI PDSSSSLLLN QILQRSQSQL SQPFLHTIRE NQSQTQCQSH LHHHQPLNDR  540
QKIQQQQQQH PHFSDHQRIP HTVSALSQLA SAPQSQNPSL QAPSSLTLPP NFSESNGNPD  600
ATSSLSPLHS IMGRLSQNEA SSLLNLQRTK PLVPPDAWLP SPKRISIESE LPSGAECVLP  660
QVDQLGPLLP MVPQHSLSLP PFPGRECPSN LSRLRGVGSE SDSTSTGMPL ATSNFMHSTG  720
TDYLLNTATT TSSCIDESVL LQSPDNVDQP NPPSRTFVKV YKSGSCGRSL DITRFSSYHQ  780
LRSELAHMFG LQGQLEDPLR SGWQLVFVDR ENDILLLGDD PWQEFVNNVW CIKILSPQEV  840
QQMGAQDYEL LNSVPIQRLS NSSCDDFVNR EDSRNLSSGI TSVGSVDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein