PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85846.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 544aa MW: 60221.3 Da PI: 8.7537

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.3	1.6e-35	141	296	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec.... 73 g+kdrhsk+ T++g+RdRR+Rls+++a++f+dLqd+L d++sk++eWL+++a +ai +l+ + + + RWR85846.1 141 SGGKDRHSKVLTAKGLRDRRIRLSVSTAIQFYDLQDRLRCDQPSKAVEWLIKAAAQAIAKLPPLdgafptspkeeeasdekrfdpdvE------Teptt 233 689***********************************************************999988777776666663333221......22222 PP TCP 74 .eaesssssasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 ++++++ +s+++ + +++a+s+ s++s+ s+l+l++ e r kar+rarert++++ ++++ RWR85846.1 234 yL--QHQQTQTQSQQQlLSLTKSACSSTSETSKGSVLSLSRsENRVKARERARERTAKEKEKEKE 296 21..2222222222224778888899999999999**9**********98887776654 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MQIRLRWNLE STAKCSKIAS ETAEIQDKRI SPGVLLKVLQ KPPPDRDIST VKRAFYHPRQ 60 LDLGRQRPRK GDRYESGMEV EEMEMQARKR WRIGNGREEV KIDDDDDDGE GEEGMGGVDK 120 EEKGRLLAWQ SSRIFRVSRA SGGKDRHSKV LTAKGLRDRR IRLSVSTAIQ FYDLQDRLRC 180 DQPSKAVEWL IKAAAQAIAK LPPLDGAFPT SPKEEEASDE KRFDPDVETE PTTYLQHQQT 240 QTQSQQQLLS LTKSACSSTS ETSKGSVLSL SRSENRVKAR ERARERTAKE KEKEKEKESN 300 LPHQQNANPN TQSSFTDLLT GCNDSASATT IPSATAQNPN PNFIPKQFRH FPPMDYFGPA 360 AIYGQGKNQH ASGFSSQAHF GNPPLSGLPL NLTAAANAVD HPELTQYPFL PEHLISVAAA 420 TATSANTDNN LNFSISSRLA GFNRGTLQSN SQSSLLPHMQ RFHSPIVDAP PNAPFFIGTA 480 ASGAAVENQF PTGFATATDA GIQTSRGKEK TEYLVCLLHL LECRQVERIA ILSPFPRQAQ 540 STAT

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MQIRLRWNLE STAKCSKIAS ETAEIQDKRI SPGVLLKVLQ KPPPDRDIST VKRAFYHPRQ  60
LDLGRQRPRK GDRYESGMEV EEMEMQARKR WRIGNGREEV KIDDDDDDGE GEEGMGGVDK  120
EEKGRLLAWQ SSRIFRVSRA SGGKDRHSKV LTAKGLRDRR IRLSVSTAIQ FYDLQDRLRC  180
DQPSKAVEWL IKAAAQAIAK LPPLDGAFPT SPKEEEASDE KRFDPDVETE PTTYLQHQQT  240
QTQSQQQLLS LTKSACSSTS ETSKGSVLSL SRSENRVKAR ERARERTAKE KEKEKEKESN  300
LPHQQNANPN TQSSFTDLLT GCNDSASATT IPSATAQNPN PNFIPKQFRH FPPMDYFGPA  360
AIYGQGKNQH ASGFSSQAHF GNPPLSGLPL NLTAAANAVD HPELTQYPFL PEHLISVAAA  420
TATSANTDNN LNFSISSRLA GFNRGTLQSN SQSSLLPHMQ RFHSPIVDAP PNAPFFIGTA  480
ASGAAVENQF PTGFATATDA GIQTSRGKEK TEYLVCLLHL LECRQVERIA ILSPFPRQAQ  540
STAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	5e-39	TCP family protein