PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85900.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 200aa MW: 21461.5 Da PI: 7.2713

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.7	1.7e-42	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+lapyfp ++p kf hk+FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ql++ela++k+ RWR85900.1 41 PCAACKILRRRCADKCILAPYFPPTEPLKFTTSHKVFGASNIIKLLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSQLQTELAKTKA 139 7***********************************************************************************************998 PP DUF260 100 e 100 e RWR85900.1 140 E 140 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MESSDTTGKT TSPMSPSPSP TSSTSPVASP PSPLPPIVVS PCAACKILRR RCADKCILAP 60 YFPPTEPLKF TTSHKVFGAS NIIKLLQELP ESQRADAVSS MVYEANARIR DPVYGCAGAI 120 CQLQKQVSQL QTELAKTKAE LLNMQTQRAN LVAIICMEAA HSQSQNQLDL AASPYTFHGN 180 NGGFVDEGNN LGAAWEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-71	LBD family protein