PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86094.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 722aa MW: 80367.9 Da PI: 8.7722

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	1e-07	623	672	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ RWR86094.1 623 RRPFSVSEVEALVQAVEKLGTGRWRDVKICAFenaKHRTYVDLKDKWKTL 672 678999*****************999999899***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MVLQKRLNYG FNGYQVPAIP QASRSARGRR SGKKAEDRQM CAFDLLATVA GELLLLKESN 60 PRPSTVSPGR TWFVTTKNTI KQEQQHKSFK HDPCEQGSSD KSAFSTKVGS HMRGANCVLE 120 DQSHAQDGAT LPPDSIKTNY ETLERVVCSE ESIIENKKDA PSHWNCHTER VSSGFEELRD 180 GEMDDRIERH ESVERKCHTE RGSSNFVEIP GGKTEDQIQR QLEARHQRIG CRTHVTTPDI 240 SSLKNPMDLD IKPPALVSSD SSIEAPLCGD PISGGLFPRC QDGVKVVSRD DDENSSRCTQ 300 HCTVSMKAFR PPHVGDRRIR KMLASKFWKV SPMLPKNREL SSSELERKPA FCSKESWYTR 360 QRTQRCYPFK RRKFSERNSV STSGRGINGD GANSPKLNSN REVIGAGATV HGVSRASTPV 420 AIQESSWKTE NSHVKLSIKS FRVPELIIEI PETATVGSLK RTVVEAVSSI LGGGLQIGVL 480 LQGKKVRDDG KTLLQTGIFC DDKLDTLGFM LEPNPAQTPS LCPEDHPHLL QPRDATQPPT 540 RYPVVPSSDP VVPDVSPDPP LVDTSNCIDS DHDSVPSPDM SSEKSTLNSR ALVAIPSMSV 600 EALAVVPLPR KTRRSELVQR RIRRPFSVSE VEALVQAVEK LGTGRWRDVK ICAFENAKHR 660 TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLSAH GYWSQQQAIQ HVKPHADPCL 720 LL

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MVLQKRLNYG FNGYQVPAIP QASRSARGRR SGKKAEDRQM CAFDLLATVA GELLLLKESN  60
PRPSTVSPGR TWFVTTKNTI KQEQQHKSFK HDPCEQGSSD KSAFSTKVGS HMRGANCVLE  120
DQSHAQDGAT LPPDSIKTNY ETLERVVCSE ESIIENKKDA PSHWNCHTER VSSGFEELRD  180
GEMDDRIERH ESVERKCHTE RGSSNFVEIP GGKTEDQIQR QLEARHQRIG CRTHVTTPDI  240
SSLKNPMDLD IKPPALVSSD SSIEAPLCGD PISGGLFPRC QDGVKVVSRD DDENSSRCTQ  300
HCTVSMKAFR PPHVGDRRIR KMLASKFWKV SPMLPKNREL SSSELERKPA FCSKESWYTR  360
QRTQRCYPFK RRKFSERNSV STSGRGINGD GANSPKLNSN REVIGAGATV HGVSRASTPV  420
AIQESSWKTE NSHVKLSIKS FRVPELIIEI PETATVGSLK RTVVEAVSSI LGGGLQIGVL  480
LQGKKVRDDG KTLLQTGIFC DDKLDTLGFM LEPNPAQTPS LCPEDHPHLL QPRDATQPPT  540
RYPVVPSSDP VVPDVSPDPP LVDTSNCIDS DHDSVPSPDM SSEKSTLNSR ALVAIPSMSV  600
EALAVVPLPR KTRRSELVQR RIRRPFSVSE VEALVQAVEK LGTGRWRDVK ICAFENAKHR  660
TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLSAH GYWSQQQAIQ HVKPHADPCL  720
LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-112	MYB_related family protein