PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86175.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 397aa MW: 43160.2 Da PI: 5.4825

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86175.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v ++G ++W++Iar + gR++k+c++rw + RWR86175.1 34 KGPWSPEEDAVLSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 79 79****************************.*********985 PP
2	Myb_DNA-binding	58	2.1e-18	86	130	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ RWR86175.1 86 RKPFTEEEDRIIVAAHAIHGNK-WASIARLLQ-GRTDNAIKNHWNST 130 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MKNEEVEAGD AAAAAADDGG APSRVGAGLE DRVKGPWSPE EDAVLSRLVS KFGARNWSLI 60 ARGISGRSGK SCRLRWCNQL DPSVKRKPFT EEEDRIIVAA HAIHGNKWAS IARLLQGRTD 120 NAIKNHWNST LRRRSFDLDR VKATSVLQEV SMERTKGSSE ETLSYGDVSS FKALDVKDVN 180 SRENISDQSD DKTHIGDDQG MAEAQDPPTL FRPVARVSAF SLYNPVNDPR SSSSLPRSTP 240 LYGSLIPRHD MEICNLLGSV CNEPKVPSRC GHGCCGFEAV GDHLRSSLLG PEFIEFVEPP 300 PISSIELASI ATDLSNIAWS KSSSIEGSAA KLPGNQGCQS VSQWNQLQQP YIIDSTRHDP 360 MQFEDGGSQL TGMMTEVLST QMPRQPLALA ANLEGLS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MKNEEVEAGD AAAAAADDGG APSRVGAGLE DRVKGPWSPE EDAVLSRLVS KFGARNWSLI  60
ARGISGRSGK SCRLRWCNQL DPSVKRKPFT EEEDRIIVAA HAIHGNKWAS IARLLQGRTD  120
NAIKNHWNST LRRRSFDLDR VKATSVLQEV SMERTKGSSE ETLSYGDVSS FKALDVKDVN  180
SRENISDQSD DKTHIGDDQG MAEAQDPPTL FRPVARVSAF SLYNPVNDPR SSSSLPRSTP  240
LYGSLIPRHD MEICNLLGSV CNEPKVPSRC GHGCCGFEAV GDHLRSSLLG PEFIEFVEPP  300
PISSIELASI ATDLSNIAWS KSSSIEGSAA KLPGNQGCQS VSQWNQLQQP YIIDSTRHDP  360
MQFEDGGSQL TGMMTEVLST QMPRQPLALA ANLEGLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-85	MYB family protein