PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR86210.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22011.4 Da    PI: 9.3239
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR86210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-23957149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ien+  rqv fskRr+g++KKA+EL++LC+ae+a+i+fs+ gk + +
  RWR86210.1  9 KKIENEDSRQVCFSKRRAGLFKKASELCILCGAEIAIIVFSPAGKAFSF 57
                68******************************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MGRQKIEIKK IENEDSRQVC FSKRRAGLFK KASELCILCG AEIAIIVFSP AGKAFSFGHP  60
CVDTIIDRFL TSSTTAILDV SSNDRHRATT LQELNQQYME LLNQVEAERK KGESLKRKRC  120
PGFWWEAPVE DMGLQELEKY RAGMEELRKK VAKRVNELAL GAAAASPAAT TPFFGRINSV  180
GVVDPFDAKP SATQRFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116153KRKRCPGFWWEAPVEDMGLQELEKYRAGMEELRKKVAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-49M-type_MADS family protein