PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86498.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 783aa MW: 86306.2 Da PI: 6.8975

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77	2.1e-24	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el RWR86498.1 134 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELIAKDLHGMEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGEL 228 99**************************9743..345679*********************************************..449999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ RWR86498.1 229 RLGIRRA 235 ****996 PP
2	Auxin_resp	119	3.9e-39	260	341	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s+ks+F+++YnPras+seF+++ +k++k +++++svGmRfkm+fe+ed++e r++G+++g+ d+dp+rWp+SkWr+L RWR86498.1 260 VANAVSMKSPFHIYYNPRASPSEFIIPHRKFLKCFDCSFSVGMRFKMRFESEDAAEHRYTGLITGIGDMDPIRWPGSKWRCL 341 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MDIDLNAIHD AVEERPCSNP PSSAICLELW HACAGPLISL PRKGSYVVYF PQGHLEQMAD 60 CCPGSVYDLP PHVICRVIDV KLHAEAASDE VYAQVSLIPE SEEAEKKLQE VEAEGDGEEE 120 EIDGLCKMAT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYRQQRP SQELIAKDLH 180 GMEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL GIRRAVQLKN 240 SGPYSVPCIQ MLNLGTLGAV ANAVSMKSPF HIYYNPRASP SEFIIPHRKF LKCFDCSFSV 300 GMRFKMRFES EDAAEHRYTG LITGIGDMDP IRWPGSKWRC LVVRWDDDVE THRHRRVSPW 360 EIEPSSSVSG SGNSSAPGSK RTKMGLPVPN VNGLLDFGES VGFQKVLQGQ EILGFRGPYD 420 GGINLSNRQL SETRGCFPGP NHHQVAALGD GVGVLPDGSE TPHKGIGFGE SVRFHKVLQG 480 QEILPPKPPY GRGVVVDTRP REGFGSKIFD GFHLSSAGNR WPALMSGFSN HTQLQASAPS 540 VQVCSPSSVL MFQQASSRDP YPYTAYSINN HLKTGEEYSG LHNCSDVLKA KYLSSQCRPY 600 FLAEDLGNMY PLYHLLQERD LSVGAPLLVD KADLEQDRAC AVPKGKSGCR LFGFSLTKET 660 EVANELVASP PSTDELKFGT SFLPSVQTLQ GKMHSKGQGL TTLQVAVALN YLNKGRVGFA 720 MMVLCIASQA ILGTNSSTVF ERKTHVGVDK MVFSGMSEDY AYGCLKELLQ LKYLNLDQLL 780 EGI

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MDIDLNAIHD AVEERPCSNP PSSAICLELW HACAGPLISL PRKGSYVVYF PQGHLEQMAD  60
CCPGSVYDLP PHVICRVIDV KLHAEAASDE VYAQVSLIPE SEEAEKKLQE VEAEGDGEEE  120
EIDGLCKMAT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYRQQRP SQELIAKDLH  180
GMEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL GIRRAVQLKN  240
SGPYSVPCIQ MLNLGTLGAV ANAVSMKSPF HIYYNPRASP SEFIIPHRKF LKCFDCSFSV  300
GMRFKMRFES EDAAEHRYTG LITGIGDMDP IRWPGSKWRC LVVRWDDDVE THRHRRVSPW  360
EIEPSSSVSG SGNSSAPGSK RTKMGLPVPN VNGLLDFGES VGFQKVLQGQ EILGFRGPYD  420
GGINLSNRQL SETRGCFPGP NHHQVAALGD GVGVLPDGSE TPHKGIGFGE SVRFHKVLQG  480
QEILPPKPPY GRGVVVDTRP REGFGSKIFD GFHLSSAGNR WPALMSGFSN HTQLQASAPS  540
VQVCSPSSVL MFQQASSRDP YPYTAYSINN HLKTGEEYSG LHNCSDVLKA KYLSSQCRPY  600
FLAEDLGNMY PLYHLLQERD LSVGAPLLVD KADLEQDRAC AVPKGKSGCR LFGFSLTKET  660
EVANELVASP PSTDELKFGT SFLPSVQTLQ GKMHSKGQGL TTLQVAVALN YLNKGRVGFA  720
MMVLCIASQA ILGTNSSTVF ERKTHVGVDK MVFSGMSEDY AYGCLKELLQ LKYLNLDQLL  780
EGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-180	ARF family protein