PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR86649.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 228aa    MW: 24441.9 Da    PI: 8.1508
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR86649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.23.7e-40201201100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v+++++lqqq+ +l+aela+++
  RWR86649.1  20 PCGACKFLRRKCVSGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHVFALQQQVVNLQAELAYMQ 118
                 7***********************9988********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  RWR86649.1 119 AH 120
                 86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MSVNGSTSSG GSSSSNSSGP CGACKFLRRK CVSGCIFAPY FDSEQGAGHF AAVHKVFGAS  60
NVSKLLLHIP AHKRLDAVVT ICYEAQARLR DPVYGCVAHV FALQQQVVNL QAELAYMQAH  120
LASLEIPSPP PLPPPPPLLA PPPLTISDLP PASTLPTTNF DLSMLFDSQV QPPWLVQQRQ  180
MDLRQQLSGN RNTPDTSMGG GDLQTLAREL LHRHRSSAVP SSEPPLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-74LBD family protein