PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86681.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 395aa MW: 44027.9 Da PI: 5.0268

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.5e-15	121	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++++ ++ +++ + +qCk++++ l+k++k +k+ +++ s++p+f++l+ RWR86681.1 121 CWSEGATATLIDAWGERYLELSRGNLKQKHWKDVADVVsSRDDYTKppkTDVQCKNRIDTLKKKFKVEKAKIASGS--GPSKWPFFQRLD 208 7***********************************84555655222778******************85..4457****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MVSKSMDEED DLEEEEDEEE EEEEYEANNY RNTKPDVQQQ QEEDDEEDEE DEEDDEEEEI 60 QSHPPAPPPP PPSNPNGPMT APSQPVTVAA PPHQTLTLAL PIQHPRPGGG GGGGGGGRED 120 CWSEGATATL IDAWGERYLE LSRGNLKQKH WKDVADVVSS RDDYTKPPKT DVQCKNRIDT 180 LKKKFKVEKA KIASGSGPSK WPFFQRLDRL IGPTRKPNST PPATPANPIH SAPPPASKIQ 240 AVVAAPHRNF HHPVHQQGPQ SSNSAGAAPD SSDSFPPPVS TKKRRVEREG GRRAKKGSVR 300 ELTRAIVKIG EVYERVERSK LQQVVELEKK RMGFAKELEL QRMQFFMKTQ LELAQMEHGR 360 VGNSNNSNNT EQLMMGELGY LATLFGFVFQ FLCKV

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MVSKSMDEED DLEEEEDEEE EEEEYEANNY RNTKPDVQQQ QEEDDEEDEE DEEDDEEEEI  60
QSHPPAPPPP PPSNPNGPMT APSQPVTVAA PPHQTLTLAL PIQHPRPGGG GGGGGGGRED  120
CWSEGATATL IDAWGERYLE LSRGNLKQKH WKDVADVVSS RDDYTKPPKT DVQCKNRIDT  180
LKKKFKVEKA KIASGSGPSK WPFFQRLDRL IGPTRKPNST PPATPANPIH SAPPPASKIQ  240
AVVAAPHRNF HHPVHQQGPQ SSNSAGAAPD SSDSFPPPVS TKKRRVEREG GRRAKKGSVR  300
ELTRAIVKIG EVYERVERSK LQQVVELEKK RMGFAKELEL QRMQFFMKTQ LELAQMEHGR  360
VGNSNNSNNT EQLMMGELGY LATLFGFVFQ FLCKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	1e-44	Trihelix family protein