PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86802.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 639aa MW: 70499.4 Da PI: 5.7646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	462	507	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L RWR86802.1 462 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 507 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MMNHWADDNA SVMEAFVTSD LSSFTWPPSS SSSAPPTATF LSSTTSEPSK VASSSSATYL 60 SQESLQQRLQ SLIEGARETW TYAIYWQSSV DVSGASLLGW GDGYYKGEED RRKRRAASAA 120 DQEHRKRVLR ELNSLVSGVA SDDVVDEEVT DTEWFFLVSM TQLFVNGTGL PGQAFFSTVP 180 IWVAGGAQLA GSSCERAHQA QVFGLQTMVC IPFGNGVVEL GSTELINFNT DLMNKVKSLF 240 SFDAVEAGVW PVQTDQGEND PSALWITEPS VTVEIKDSTA APEISKSTLF ENGSSSTLTE 300 NPSSIQNHNH HHHQKQQQQQ NHQTQSFFLR EQSFSEFGFD TAGRSSATPQ TCKPESGEIL 360 NFGESKRTQQ SNSNATFFLQ TAPDEEKKRK KPAKSGNDEG MLSFASAVVF PTSGGVKSGD 420 SDHSDLEASV REAESSRVVV ETEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA 480 LRAVVPNVSK MDKASLLGDA ISYINELKTK LQNLETDKEE LQSQLESLKK ESRCNGGPPH 540 RDPHQRIASN GLQGVEIDVK VLGWEAMIRL QCNKNNHPAA KLMVALMELD LEVNHASVSV 600 VNDLMIQQAT VKMGSRVYTK EQLNVTLLGK LSEHLNGCR

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MMNHWADDNA SVMEAFVTSD LSSFTWPPSS SSSAPPTATF LSSTTSEPSK VASSSSATYL  60
SQESLQQRLQ SLIEGARETW TYAIYWQSSV DVSGASLLGW GDGYYKGEED RRKRRAASAA  120
DQEHRKRVLR ELNSLVSGVA SDDVVDEEVT DTEWFFLVSM TQLFVNGTGL PGQAFFSTVP  180
IWVAGGAQLA GSSCERAHQA QVFGLQTMVC IPFGNGVVEL GSTELINFNT DLMNKVKSLF  240
SFDAVEAGVW PVQTDQGEND PSALWITEPS VTVEIKDSTA APEISKSTLF ENGSSSTLTE  300
NPSSIQNHNH HHHQKQQQQQ NHQTQSFFLR EQSFSEFGFD TAGRSSATPQ TCKPESGEIL  360
NFGESKRTQQ SNSNATFFLQ TAPDEEKKRK KPAKSGNDEG MLSFASAVVF PTSGGVKSGD  420
SDHSDLEASV REAESSRVVV ETEKRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA  480
LRAVVPNVSK MDKASLLGDA ISYINELKTK LQNLETDKEE LQSQLESLKK ESRCNGGPPH  540
RDPHQRIASN GLQGVEIDVK VLGWEAMIRL QCNKNNHPAA KLMVALMELD LEVNHASVSV  600
VNDLMIQQAT VKMGSRVYTK EQLNVTLLGK LSEHLNGCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	391	KKRKK
2	444	452	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-173	bHLH family protein