PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86808.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 369aa MW: 40943.1 Da PI: 5.9927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd +++ G g+W++ ++ g++R++k+c++rw +yl RWR86808.1 14 KGPWTPEEDQKLVDFIQRNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56	9.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++ eE++++++++ +G++ W++Ia +++ gRt++++k++w+++l RWR86808.1 67 RGRFSDEEEQIIIKLHSHMGNK-WSAIATRLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGRAPCCDED GIKKGPWTPE EDQKLVDFIQ RNGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGRF SDEEEQIIIK LHSHMGNKWS AIATRLPGRT DNEIKNYWNT HLKKKLLQMG 120 IDPVTHKPRT DLNHLLGSIT HLLMASNLGN LMNPWDNALM DAAQLAKMQW LQSLLSMMTT 180 SNNPPNMEAM NLMGSPAFTD RQISEFLRSN CQLNGLLDGS LGVAHDPMPM QSNFSNLGTQ 240 QLPCLYQALD ESCASLEGQE TSGAIDGSGS KAPNYNINHY SINNNHMVMS SCGGTAPGIP 300 TQTLFSSSSE IVKAEAVQDQ VNPTEISTRS SASTTFEGWG ELNLDDQASD YCWADIIDQT 360 SSPSWRNDL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGRAPCCDED GIKKGPWTPE EDQKLVDFIQ RNGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGRF SDEEEQIIIK LHSHMGNKWS AIATRLPGRT DNEIKNYWNT HLKKKLLQMG  120
IDPVTHKPRT DLNHLLGSIT HLLMASNLGN LMNPWDNALM DAAQLAKMQW LQSLLSMMTT  180
SNNPPNMEAM NLMGSPAFTD RQISEFLRSN CQLNGLLDGS LGVAHDPMPM QSNFSNLGTQ  240
QLPCLYQALD ESCASLEGQE TSGAIDGSGS KAPNYNINHY SINNNHMVMS SCGGTAPGIP  300
TQTLFSSSSE IVKAEAVQDQ VNPTEISTRS SASTTFEGWG ELNLDDQASD YCWADIIDQT  360
SSPSWRNDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-96	MYB family protein