PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86933.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 508aa MW: 55910.4 Da PI: 4.8988

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	321	363	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L RWR86933.1 321 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 363 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MVSRANGAAW MEGNGEEEEE AISWPRITEK QDELSLSNFK SLLEEDWYMN TTSNPPQNDF 60 QTIQNHQEIK DIAFSSDPNS FNLDSSQPFF PPKNCLSSLL GTVCSNPFEA GFDLSCDAGF 120 LSSNSSVLMN RGVLSGFGEM GSNGQMGVLD LSSEGKFPTT HLLPYSENPV FDPSGFGGFE 180 GSSSNALFLN RPKALRPLEI FPPVGAQPTL FQKRAALRQN LTPAETSNQI RVDGSSSSKE 240 RWDLEEDQEQ KRRNISGHDE MDDTSIDASG LNYDSDEGGR IEDAKLEESG RNRGSNSNAN 300 SSVTGVDQKG KKKGFPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL 360 KELLQRINDL HNELESTPSS YSLPASTSFH PLTPTPLTLP SRVKEELCPS SLPSPNSQPA 420 RVEVRVREGR AVNIHMFCAR RPGLLLSAMR ALDGLGLDIQ QAVISCFNGF ALDVFRAEQC 480 GEGADVLPEE IKAVLLHSAG FHGTMLDH

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MVSRANGAAW MEGNGEEEEE AISWPRITEK QDELSLSNFK SLLEEDWYMN TTSNPPQNDF  60
QTIQNHQEIK DIAFSSDPNS FNLDSSQPFF PPKNCLSSLL GTVCSNPFEA GFDLSCDAGF  120
LSSNSSVLMN RGVLSGFGEM GSNGQMGVLD LSSEGKFPTT HLLPYSENPV FDPSGFGGFE  180
GSSSNALFLN RPKALRPLEI FPPVGAQPTL FQKRAALRQN LTPAETSNQI RVDGSSSSKE  240
RWDLEEDQEQ KRRNISGHDE MDDTSIDASG LNYDSDEGGR IEDAKLEESG RNRGSNSNAN  300
SSVTGVDQKG KKKGFPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL  360
KELLQRINDL HNELESTPSS YSLPASTSFH PLTPTPLTLP SRVKEELCPS SLPSPNSQPA  420
RVEVRVREGR AVNIHMFCAR RPGLLLSAMR ALDGLGLDIQ QAVISCFNGF ALDVFRAEQC  480
GEGADVLPEE IKAVLLHSAG FHGTMLDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	329	KKKGFPAKNLMAERRRRKK
2	323	330	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-117	bHLH family protein