PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR86989.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 683aa    MW: 75748.5 Da    PI: 5.7834
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR86989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.11.9e-1353186821374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lLl+cAeav+++d   a+++L +l+  ++p gd+mqR+a++fteAL arla + ++  ++   ++ ++ + ns+e+l++++++++++P++kf+h+t
  RWR86989.1 318 LVHLLLACAEAVAKDDYLSARRFLHHLNRVVTPLGDSMQRVASCFTEALTARLAATLTTSPNSStpKSFTSLPPNSVEVLKVYQILYQACPYVKFAHFT 416
                 68****************************************************955444444401444444556************************ PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaI ea+e e+rvH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e+++etg+rL+++A++l+vpfef++ + +rledl++++++ 
  RWR86989.1 417 ANQAIFEAFEAEDRVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGS----SLESVKETGRRLNELAHSLHVPFEFHP-IGERLEDLQPHMFHR 510
                 ****************************************************....9**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + gEalaVn+v +lhr+        ++  +++ ++++  P+++++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s er+kvE+ +++ ei+
  RWR86989.1 511 RVGEALAVNSVGHLHRVS------GNHLGNLIAMIRDQAPNIFTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSPERAKVEQYIFAAEIR 603
                 *****************8......444557********************************************************************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+vacegaer+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  RWR86989.1 604 NIVACEGAERVERHERLEKWRKIMEGKGFKGVALSANAVTQSKILLGLYPCDGYRLTEDRGCLLLGWQDRAIIAASAWR 682
                 ******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    
MINSLCGSMG CVKTENSSCS KPQPPSPTDS VSESNNVAAS DFDRTDQNDQ NPLSTFQDLK  60
FDVDVEVQSP DNSIWESLFT DQLDVGAADF MISSPRRDFM VCSPKRELMI CSPKREFMAV  120
SPKRTLLSQS GYNHSNYSYG QSMHGQRCTQ QQVVGCCGSN LCNWAPMGPV SNTHKGKPQS  180
PLHRLSNTTQ FVQPDSLPLP AMDGFMDDYF RECYGGYPNP TVKMVGAGCG PESLDTSTVE  240
LPGMFDCLPQ MSSRFCGSIS DASSLTQERD VYQMSSFVTA PQLQPPPPPS QQQQAVQQPP  300
QQQLQENLEQ EQDSGLQLVH LLLACAEAVA KDDYLSARRF LHHLNRVVTP LGDSMQRVAS  360
CFTEALTARL AATLTTSPNS STPKSFTSLP PNSVEVLKVY QILYQACPYV KFAHFTANQA  420
IFEAFEAEDR VHVIDLDILQ GYQWPAFMQA LAARPSGAPF LRITGVGSSL ESVKETGRRL  480
NELAHSLHVP FEFHPIGERL EDLQPHMFHR RVGEALAVNS VGHLHRVSGN HLGNLIAMIR  540
DQAPNIFTLV EQEASHNGPY FLGRFLEALH YYSAIFDSLD ATFPADSPER AKVEQYIFAA  600
EIRNIVACEG AERVERHERL EKWRKIMEGK GFKGVALSAN AVTQSKILLG LYPCDGYRLT  660
EDRGCLLLGW QDRAIIAASA WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-97GRAS family protein