PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87022.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

NF-YC

Protein Properties

Length: 216aa MW: 24549.8 Da PI: 5.9324

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.8	2.4e-56	25	129	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv RWR87022.1 25 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 123 89***998899********************************************************************************** PP NF-YC 97 prdelk 102 prde+k RWR87022.1 124 PRDEIK 129 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MENQQSQSYT QQPPFHHLLQ QQQQQLQMFW NYQRQEIEQV NDFKNHQLPL ARIKKIMKAD 60 EDVRMISAEA PVLFAKACEL FILELTIRSW LHAEENKRRT LQKNDIAAAI TRTDIFDFLV 120 DIVPRDEIKD EGGVGMVGPS SGVPYYYPPI GQPSPGMMIG RPAVPGIDPM YVQRQQQQGW 180 QPMWQPGMAD DGTYGGGGGH KQSFDGQPYI GHPPGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	104	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-73	NF-YC family protein