PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87037.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 206aa MW: 23675.3 Da PI: 10.6619

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRrng+lKKA+ELSvLCdaev++i fs tgk y yss RWR87037.1 9 KRIENTTSRQVTFSKRRNGLLKKAFELSVLCDAEVCLIAFSATGKAYQYSS 59 79***********************************************96 PP
2	K-box	72.7	1.1e-24	84	171	12	99
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e ++ el++L++ ++L+ ++hl GedL sL++keL+qLe+q++ ++++iR++K ++ e+i+ l+ k+++lq+en +L++k++ RWR87037.1 84 RTIEFWRAELDNLRRSKDSLEARLKHLAGEDLMSLNMKELKQLERQVKVGVERIRTRKRCIISEHISLLKGKQRALQDENACLQRKVK 171 56799********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MGRGKVELKR IENTTSRQVT FSKRRNGLLK KAFELSVLCD AEVCLIAFSA TGKAYQYSSH 60 EMERTISKYR SMAGVPELNV RHPRTIEFWR AELDNLRRSK DSLEARLKHL AGEDLMSLNM 120 KELKQLERQV KVGVERIRTR KRCIISEHIS LLKGKQRALQ DENACLQRKV KLHETNTSSR 180 SLANNQLAID FQGIGKSRMD GVPNYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-46	MIKC_MADS family protein