PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87115.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 450aa MW: 49132.2 Da PI: 8.7594

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.3	1.5e-09	46	71	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C++G +C+F+H+p RWR87115.1 46 GEQDCAYYLRTGLCRFGMTCRFNHPP 71 6789********************97 PP
2	zf-CCCH	38.4	2.1e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF H++ RWR87115.1 92 QPECQYYLKTGTCKFGPTCKFDHPR 116 799********************96 PP
3	zf-CCCH	35.2	2.1e-11	138	162	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ RWR87115.1 138 EKECAYYLRTGQCKFGGTCKFHHPQ 162 679********************97 PP
4	zf-CCCH	37.7	3.5e-12	300	325	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG CkyG+ C+F+H++ RWR87115.1 300 DQPECQFYMKTGDCKYGAMCRFHHPR 325 689*********************96 PP
5	zf-CCCH	39.1	1.3e-12	345	370	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f++r+G+CkyG++CkF H+ RWR87115.1 345 PGEPLCVFYSRYGICKYGPNCKFDHP 370 589**********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MEYDTGIQIS REGSSLTQHL KEDTMWQMNL RSNESMEAGP YPERPGEQDC AYYLRTGLCR 60 FGMTCRFNHP PNRKLAVAAA KMKGGYPERI GQPECQYYLK TGTCKFGPTC KFDHPRDKAG 120 IAGRVQLNIM GFPLRPNEKE CAYYLRTGQC KFGGTCKFHH PQPSSAVVSM RGSPVYPAVH 180 SPTTPGQQSY PGGLTNWSLS RASFIASPRW QGPSSFAQLM VPHGVVQVPG WSTYAGQLGS 240 VSSSESQQQT LGNSQYYGTP RQSETASVGA QGTYSSYRPG SIPMGLYALQ RENVFPERPD 300 QPECQFYMKT GDCKYGAMCR FHHPRERLIP APNCALSPLG LPLRPGEPLC VFYSRYGICK 360 YGPNCKFDHP IPTGHTYGFS TSSSDAPVVR RLLGSSSGSA ALPLSSEGPA EAGQGKSRRL 420 SLSGQMTSGD ENREGEGSHS SSIGPVSTFS

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MEYDTGIQIS REGSSLTQHL KEDTMWQMNL RSNESMEAGP YPERPGEQDC AYYLRTGLCR  60
FGMTCRFNHP PNRKLAVAAA KMKGGYPERI GQPECQYYLK TGTCKFGPTC KFDHPRDKAG  120
IAGRVQLNIM GFPLRPNEKE CAYYLRTGQC KFGGTCKFHH PQPSSAVVSM RGSPVYPAVH  180
SPTTPGQQSY PGGLTNWSLS RASFIASPRW QGPSSFAQLM VPHGVVQVPG WSTYAGQLGS  240
VSSSESQQQT LGNSQYYGTP RQSETASVGA QGTYSSYRPG SIPMGLYALQ RENVFPERPD  300
QPECQFYMKT GDCKYGAMCR FHHPRERLIP APNCALSPLG LPLRPGEPLC VFYSRYGICK  360
YGPNCKFDHP IPTGHTYGFS TSSSDAPVVR RLLGSSSGSA ALPLSSEGPA EAGQGKSRRL  420
SLSGQMTSGD ENREGEGSHS SSIGPVSTFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-158	C3H family protein