PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87316.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 368aa MW: 41329.7 Da PI: 5.9948

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d++++ G g+W+t ++ g++R++k+c++rw +yl RWR87316.1 14 KGPWTPEEDQKLMDYIQKQGHGSWRTLPKQAGLNRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.6	5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++++ ++ lG++ W++Ia++++ gRt++++k++w++++ RWR87316.1 67 RGVFSKEEEQIIITLHSILGNK-WSAIANHLP-GRTDNEIKNFWNTHM 112 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRSPCCHEA SVKKGPWTPE EDQKLMDYIQ KQGHGSWRTL PKQAGLNRCG KSCRLRWINY 60 LRPDIKRGVF SKEEEQIIIT LHSILGNKWS AIANHLPGRT DNEIKNFWNT HMKKKLLKMG 120 IDPVTHRPRA DLNLLERLTH FLGGSNFVNS MNPWDSALRV QEDTENVIRL QLLQSLLQSI 180 ANYPPNMEAL NLMGLPTFGD FQLNDLRGSN CQFDGLVDGV LGIVHDPISL PSSFSNLGEL 240 QVPKDYEALK GPCTSVVEQA STDWFASKMP DLVYDNENNC STDNCMSTSS YILPSSNPTP 300 TLMVSAASSI DQMMDQINPT GISTHSSTST TFEDWGELNL DYQARGHQWT DFRPNGIIDY 360 TPLQNTGL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRSPCCHEA SVKKGPWTPE EDQKLMDYIQ KQGHGSWRTL PKQAGLNRCG KSCRLRWINY  60
LRPDIKRGVF SKEEEQIIIT LHSILGNKWS AIANHLPGRT DNEIKNFWNT HMKKKLLKMG  120
IDPVTHRPRA DLNLLERLTH FLGGSNFVNS MNPWDSALRV QEDTENVIRL QLLQSLLQSI  180
ANYPPNMEAL NLMGLPTFGD FQLNDLRGSN CQFDGLVDGV LGIVHDPISL PSSFSNLGEL  240
QVPKDYEALK GPCTSVVEQA STDWFASKMP DLVYDNENNC STDNCMSTSS YILPSSNPTP  300
TLMVSAASSI DQMMDQINPT GISTHSSTST TFEDWGELNL DYQARGHQWT DFRPNGIIDY  360
TPLQNTGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-81	MYB family protein