PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87327.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 721aa MW: 78845.2 Da PI: 5.7255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	474	519	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L RWR87327.1 474 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 519 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MTEYRLPAMN LWSDDNASMM EAFISSDLSS FWPPSSASTT AIAAAANASD PLKSMAAASF 60 LNQDSLQQRL QALIEGARES WTYAIYWQSS VDGSGVPFLG WGDGYYKGEE DKRKRKASAA 120 VSAAVQEHRK QVLRDLNSLI SGSAAVTDDA IDEEVTDTEW FFLVSMTQSF VNGAGIPAQV 180 FFAGSAIWIA GGDRLAGSVC ERAQQARSFG LQTMVCIPSA NGVVELGSTE VILQSLDLMS 240 KVRVLFNFNG LEIGGGGGIW SSSATAVPAP QADQGESDPS ALWLTDPSPA VEIKDSAAAA 300 ALHESSKSIQ FENPSSSSLT ENPSSFQLNH HQQQQSYYSR ELNFSEYGFE NSATRNPTPC 360 KPESGDILNF GESKRNSNGI LFSQHQQTLT EEKNKMRSAT SRSSNEEGML SFASAVVAPS 420 SGIVKSSTGG GGDSDHSDLD ASVREAESSR VVDTEKRPRK RGRKPANGRE EPLNHVEAER 480 QRREKLNQRF YALRAVVPNV SKMDKASLLG DAISYINELK SKMQTLESDK EGLQSQINSL 540 RKDHLTNKDP SRYPSGLPLH DPHHHHDLKI SNLSRGKCSG VEIDVKVLGW EAIIRCQCDK 600 KNHPAARLMV ALKELDLDVL YASVQVVNEL MIQQATVKMS SRMYTHDQLS AALFAQLAEP 660 AKQVRLDNVA AALEGVSHQE EPLLRRESIH VYFLFNMEGV APVHESFVII LLHGVTSERM 720 L

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MTEYRLPAMN LWSDDNASMM EAFISSDLSS FWPPSSASTT AIAAAANASD PLKSMAAASF  60
LNQDSLQQRL QALIEGARES WTYAIYWQSS VDGSGVPFLG WGDGYYKGEE DKRKRKASAA  120
VSAAVQEHRK QVLRDLNSLI SGSAAVTDDA IDEEVTDTEW FFLVSMTQSF VNGAGIPAQV  180
FFAGSAIWIA GGDRLAGSVC ERAQQARSFG LQTMVCIPSA NGVVELGSTE VILQSLDLMS  240
KVRVLFNFNG LEIGGGGGIW SSSATAVPAP QADQGESDPS ALWLTDPSPA VEIKDSAAAA  300
ALHESSKSIQ FENPSSSSLT ENPSSFQLNH HQQQQSYYSR ELNFSEYGFE NSATRNPTPC  360
KPESGDILNF GESKRNSNGI LFSQHQQTLT EEKNKMRSAT SRSSNEEGML SFASAVVAPS  420
SGIVKSSTGG GGDSDHSDLD ASVREAESSR VVDTEKRPRK RGRKPANGRE EPLNHVEAER  480
QRREKLNQRF YALRAVVPNV SKMDKASLLG DAISYINELK SKMQTLESDK EGLQSQINSL  540
RKDHLTNKDP SRYPSGLPLH DPHHHHDLKI SNLSRGKCSG VEIDVKVLGW EAIIRCQCDK  600
KNHPAARLMV ALKELDLDVL YASVQVVNEL MIQQATVKMS SRMYTHDQLS AALFAQLAEP  660
AKQVRLDNVA AALEGVSHQE EPLLRRESIH VYFLFNMEGV APVHESFVII LLHGVTSERM  720
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	456	464	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein