PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87339.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

GATA

Protein Properties

Length: 545aa MW: 60284.9 Da PI: 6.8161

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	40.1	5.1e-13	7	49	1	35
GATA 1 CsnCgttk........TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+ TplWR+gp ++ LCnaCG ++r kg+ RWR87339.1 7 CYHCGVTNeryiytagTPLWRNGPPEKPVLCNACGSRWRTKGT 49 99********************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MGKQGPCYHC GVTNERYIYT AGTPLWRNGP PEKPVLCNAC GSRWRTKGTL ANYTPLHVRA 60 ELVDSEDYNK AYEAKPLSIK TKAMKLHKRK YLNDNAEFRG QAPNANQNFQ KAFEEDTSNG 120 PNSGPAISSS ESSAHFGNTD ARDLKGLRFS SAQSIVWDSL VPSRKRTCVG RPKPSAVEKL 180 TKDLYCMLHE QQLSNISALS EEELLLESGT LMDSVEIGHG GILIKHLNVV AQDEESEASS 240 LPIDCRAHIT ENAYSGPASI LVNAANKRIS YPHMVSEKVG MHTGQAAQDH TIRNNFSNDK 300 HHILRNSKSP LTSVDLIDIV CFEKFTKNLT QEEQQQLLKF LPSIDTAKLP DSLKSMFDSP 360 LFVEALSSFQ HLFLEGILDL SSSGVKIEEC WILKRPALGN MTKSKWVEHY ELLKDEECQI 420 GGKIVETEIN SPGCSNSASV KRTHDVQNQN FPEPKCLVKG SKRVCNSMTV NIPPARSPQP 480 NYCGVGIKTS NDTKYMDNEG PSFSPTSLFA FSPDGYSITL DPLQFSGNSS NQDFLLDVNS 540 YASVP

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MGKQGPCYHC GVTNERYIYT AGTPLWRNGP PEKPVLCNAC GSRWRTKGTL ANYTPLHVRA  60
ELVDSEDYNK AYEAKPLSIK TKAMKLHKRK YLNDNAEFRG QAPNANQNFQ KAFEEDTSNG  120
PNSGPAISSS ESSAHFGNTD ARDLKGLRFS SAQSIVWDSL VPSRKRTCVG RPKPSAVEKL  180
TKDLYCMLHE QQLSNISALS EEELLLESGT LMDSVEIGHG GILIKHLNVV AQDEESEASS  240
LPIDCRAHIT ENAYSGPASI LVNAANKRIS YPHMVSEKVG MHTGQAAQDH TIRNNFSNDK  300
HHILRNSKSP LTSVDLIDIV CFEKFTKNLT QEEQQQLLKF LPSIDTAKLP DSLKSMFDSP  360
LFVEALSSFQ HLFLEGILDL SSSGVKIEEC WILKRPALGN MTKSKWVEHY ELLKDEECQI  420
GGKIVETEIN SPGCSNSASV KRTHDVQNQN FPEPKCLVKG SKRVCNSMTV NIPPARSPQP  480
NYCGVGIKTS NDTKYMDNEG PSFSPTSLFA FSPDGYSITL DPLQFSGNSS NQDFLLDVNS  540
YASVP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-102	GATA family protein