PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87394.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LSD

Protein Properties

Length: 188aa MW: 20569.6 Da PI: 7.1728

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	33.6	6.3e-11	113	137	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL Y GA+sV+Ca+C++V RWR87394.1 113 CSGCQKLLLYAHGATSVCCAVCNAV 137 ************************9 PP
2	zf-LSD1	46.3	6.8e-15	152	175	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC+tlL+Y rGA+sV+C++C+t RWR87394.1 152 CGGCHTLLMYIRGATSVQCSSCHT 175 ***********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MRHIDGHYIN IPNLEPDSLL DALKSACHHA CFTDDNLSAG NGRWEFVFPY LRMQGFKVEG 60 RWQPVSDKQC RSPYPIPPVP FTPPSGSSHE DIKLYGIYEI FAHYSGVQSQ LVCSGCQKLL 120 LYAHGATSVC CAVCNAVTNV PSPGTEMAQL VCGGCHTLLM YIRGATSVQC SSCHTFNLAL 180 EGKKISSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-31	LSD family protein