PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87398.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41165.3 Da    PI: 9.18
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-18135184150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                 k+ie ks rqv fskRr+ ++KKA+ELS+LC+++ av+ f + g+l+ ++
  RWR87398.1 135 KKIEKKSARQVCFSKRRQILFKKAKELSILCGVDRAVLTFFPAGRLFSFA 184
                 68*********************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MLKPGDGHER ERERAKGERR RSEREIGRGS MPWFQERSEI FREKTPSAKE IEKDLKFLGQ  60
KHKAMGTRSP SLVVLDCHHH LQHHVVANRP VGFLQVHFTS NNLIAGYELI ILFLHIKTKK  120
KSPPKSMGKR KIEMKKIEKK SARQVCFSKR RQILFKKAKE LSILCGVDRA VLTFFPAGRL  180
FSFANTDIDS ILGRYCKEEL PIQRRGASTA AGTAWRGERE SSFTNRGVVV FVVVGSIIVS  240
SSNLTKCTAA DVKWPSTLDF FSQSSLGDES AANAMHTTYV EPPPLHLPHD GVMQVDSFSL  300
DFAKDDVVLM MPSFEEDYEN GLMKSIFEEV DDELMLMSMI SRPSTETSFD DMFPPLNIQF  360
GSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.14e-14MIKC_MADS family protein