PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87408.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 280aa    MW: 31069.8 Da    PI: 4.2478
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-231058250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                rie ks rqv fskRr+g++KKA+ELS+LC++++ +++fs+ g++y ++
  RWR87408.1 10 RIEKKSARQVCFSKRRQGLFKKAKELSTLCGVDITILVFSPAGRFYSFA 58
                8**********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGKRKIEMRR IEKKSARQVC FSKRRQGLFK KAKELSTLCG VDITILVFSP AGRFYSFANT  60
DIESILARYC KENNCKSPTS TTSTTTTTSN GEGGDNFWRE KVNVKEMEKE SDLQQQLQNS  120
LQEVRGKVVS RIEEPISSAS SLSSLVTLPS SLDLTTSAAA AAADVTWLPP LDHLLPPRSV  180
GDESAANAMN TTNVELEAPP LPLPHDGDCV RQVEEESLFL DFALDEDDDG LLMPVFGEEY  240
DDGLLMKPEF EDDGLISRPM DDDMFVPLDD YGTLFGSFEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-18M-type_MADS family protein