PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87434.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32757.9 Da    PI: 7.5662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18132186256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  RWR87434.1 132 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 186
                 788899***********************************************98 PP
2HD-ZIP_I/II1253.3e-40132221191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL+kev+eLr +l
   RWR87434.1 132 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRLCENLTEENRRLQKEVQELR-AL 221
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MTLEKEDLGL SLSLNSNSFE NRQSLQLNPM SSSSPSSHFL LQKSSWNHVF GSAERSCEIF  60
KGETRPFLKG IDVNRLPSTA DCEEEAGISS PNSTLSSVSG KRSERDPIGD EIEIERDSSR  120
GISDDEDGET SRKKLRLSKD QSAVLEESFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN  180
RRARTKLKQT EVDCEFLKRL CENLTEENRR LQKEVQELRA LKLSPQLYMH MPPPTTLTLC  240
PSCERVAVSS SDANHRPHHP IPISPWAPPP PPPPHAPFIR ALDPHPTSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137SRKKLRL
2181189RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.19e-76HD-ZIP family protein