PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87468.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 329aa MW: 36350.7 Da PI: 5.3204

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F + L H+r+H RWR87468.1 5 SCKLCSRTFANGRALGGHMRSH 26 6********************9 PP
2	zf-C2H2	12.7	0.0004	201	223	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H ++H RWR87468.1 201 FQCETCKKVFPSYQALGGHRSSH 223 89*************99999988 PP
3	zf-C2H2	12.1	0.00058	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H RWR87468.1 257 HQCPVCFRVFSSGQALGGHKRSH 279 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MERRSCKLCS RTFANGRALG GHMRSHMALL SLSPQPHKAP PSQNQYSSSS PSSSSSSSSS 60 SEDEEEEQEE EEQEEDEKSP YYVLRENPQK SFRLADPEFS FAVDASSVIQ DRESETESSK 120 HPLRRRSKRF RKSAYSALRP DTEHEPLSSV SDTTTEEDVA LCLMMLSRDV WTTESRKSSD 180 EQSENDEPDE DDDLPKARNR FQCETCKKVF PSYQALGGHR SSHKKIRACG ADGGERAQVG 240 DSDGKAAAGE AQRRRIHQCP VCFRVFSSGQ ALGGHKRSHF AAPAAASPPS AAVRLGDHFI 300 DLNLPAPAED DDMVELSAVS DADFIHPAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-53	C2H2 family protein