PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87615.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 798aa    MW: 86909 Da    PI: 6.3819
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-20108163156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  RWR87615.1 108 KKRYHRHTPQQIQELETLFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 163
                 688999***********************************************999 PP
2START204.83.4e-643125361206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+++a+ep+W  s     e +n++e++++f++        + +ea+r+ g+v+ +++  ve+l+d + +W ++++    +a+t++vis
  RWR87615.1 312 ELALAAMDELVKMVQAGEPLWIPSLdggkETLNYEEYVRSFPRCIRpkpvgFVTEASRDNGMVIINSMAFVETLMDAN-RWAQMFPciiaRASTTDVIS 409
                 5899*************************************9977799999***************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 sg      gal+lm ael +lsplvp R++ f+R+++q+ +g+w++vdvS+d  +++p+ s ++ +++lpSg+++++++ng+skvtwveh++++++ +h
  RWR87615.1 410 SGmcgtrnGALHLMHAELHVLSPLVPiREVNFLRFCKQHADGVWAVVDVSIDGIRENPTASTYINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESAVH 508
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+r+l++sg+ +ga++wvatlqr c++
  RWR87615.1 509 QLYRRLLSSGMGFGAQRWVATLQRECQC 536
                 *************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    
MSFGGFLDNG SSARVVADIP YSSMPAGAIS QPHLVSPTLT NTMFNSPGLS LALQPNMEGR  60
GEMGRIGGEF EASGSGRSKD DEYESRSGSD NMEGGSGDDQ DADNPPRKKR YHRHTPQQIQ  120
ELETLFKECP HPDEKQRLEL SRRLSLETRQ VKFWFQNRRT QMKTQLERHE NSLLRQENDK  180
LRAENLTIRD AMRNPICSNC GGPAMLGEVS LEEQHLRIEN ARLKDELDRV CALAGKFLGR  240
PVTSMTTASI PPQMPISSLE LAVGSNGFGG LSSVATTLPP GADFGAVSPT MSMVPGARPA  300
NVTGMERSMF LELALAAMDE LVKMVQAGEP LWIPSLDGGK ETLNYEEYVR SFPRCIRPKP  360
VGFVTEASRD NGMVIINSMA FVETLMDANR WAQMFPCIIA RASTTDVISS GMCGTRNGAL  420
HLMHAELHVL SPLVPIREVN FLRFCKQHAD GVWAVVDVSI DGIRENPTAS TYINCRRLPS  480
GCVVQDMPNG YSKVTWVEHA EYDESAVHQL YRRLLSSGMG FGAQRWVATL QRECQCLAIL  540
MSSAISGRDH TAITPGGRRS MLKLAQRMTN NFCAGVCAST VHKWNKLCVG NVDEDVRVMT  600
RKSVDDPGEP PGIVLSAATS VWLPVSPSRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK  660
GPDHGNCVSL LRASAMNANQ SSMLILQETC VDAAGALVVY APVDIPAMHV VMNGGDSAYV  720
ALLPSGFAIV PDGPGCGPYN NSTNSGNQKV GGSLLTVAFQ ILVNHLPTAK LTDESVDTVN  780
NLISCTVQKI KGALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein