PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87628.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 262aa MW: 29876.9 Da PI: 7.8869

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl RWR87628.1 14 KGPWTAREDMLLAKYIQAHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.7	1.8e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ RWR87628.1 67 RGNIGPDEEDLIIRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 677789**************.*****.*********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MGRAPCCSKV GLHKGPWTAR EDMLLAKYIQ AHGEGQWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI GPDEEDLIIR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNT QLSKRIRNRG 120 ADHNHQSGVS EALDPANMKD NNYKNQENSN CKEKIERSQT QIHVPKPIRL TSFPRDFQVM 180 EARNSSDSKL VSGPAVHGGE VVKEDLIGPW PDLKDGDLLD EEIEHELRSH GHIKDGMLEK 240 LYGEYLELLN EEEGKVQLDS LC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-63	MYB family protein