PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87712.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 398aa MW: 45168.6 Da PI: 6.2987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45	2e-14	191	242	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i A+++Ik+L+ RWR87712.1 191 QRMTHIAVERNRRKQMNEHLNSLRSLMPTS---FVQRGDQASIIGGAIDFIKELE 242 79*************************9...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MERLQGPINP GFFGEHLNVE PLEEGNALDF SYLSFLNAEN SRLEDPFSNP TSFHDKMPFL 60 QMLEGFECPP ISSLTEPNFQ LLLRMQQEKN PWKKNTEIPP LELESCITHT SESLSPVKSE 120 TKDQQYPHSS SYPEVVSSNC IQTPNSPEKW KKNSNSGSSF AQIAKQLPPI REKRKRKRTR 180 PSKNSEEVEN QRMTHIAVER NRRKQMNEHL NSLRSLMPTS FVQRGDQASI IGGAIDFIKE 240 LEQLLQSLQA QKQRQESEEE GQQSPSSSSS SPFKEFFRCP QYTSYSSQQS QYMLGSYIDG 300 DPNHFRAESR SAVADIEVSV VQTHVNLKIL SERRPGQLLK AIAALEDLYL AVLHLNVTST 360 DRSVLYSFNL KIEEGCKLGS ADDIATAVHH IFSFINSI

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MERLQGPINP GFFGEHLNVE PLEEGNALDF SYLSFLNAEN SRLEDPFSNP TSFHDKMPFL  60
QMLEGFECPP ISSLTEPNFQ LLLRMQQEKN PWKKNTEIPP LELESCITHT SESLSPVKSE  120
TKDQQYPHSS SYPEVVSSNC IQTPNSPEKW KKNSNSGSSF AQIAKQLPPI REKRKRKRTR  180
PSKNSEEVEN QRMTHIAVER NRRKQMNEHL NSLRSLMPTS FVQRGDQASI IGGAIDFIKE  240
LEQLLQSLQA QKQRQESEEE GQQSPSSSSS SPFKEFFRCP QYTSYSSQQS QYMLGSYIDG  300
DPNHFRAESR SAVADIEVSV VQTHVNLKIL SERRPGQLLK AIAALEDLYL AVLHLNVTST  360
DRSVLYSFNL KIEEGCKLGS ADDIATAVHH IFSFINSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	203	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-41	bHLH family protein