PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87806.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 309aa    MW: 34777.4 Da    PI: 5.3816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
       RWR87806.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding55.21.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l+++++ + G++ W+ Ia++++ gRt++++k++w+++
       RWR87806.1  67 RGRFTQEEEKLIINLHGLVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TQEEEKLIIN LHGLVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPQ  120
MPPQTSSTTI PMTQSMEFIP SSFSSLQLDA LNQDASTKPF PETMFSSPCP LFMLDNNLVG  180
GTSSREDLVA NEIAGMSSDA WSFNQHQVQA MSTPFSFSGS SADTNCLPPL LDNMDGMMVP  240
MVVKSCSMDE PGEMGAECIE RQDFNEWAES QQCPGFLIWE HVEGQLNGEG ITPVSSNMEA  300
MLSTFPSSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.18e-99MYB family protein