PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87859.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 291aa    MW: 33163.4 Da    PI: 10.0329
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien   rqvtfskRrng+lKKA+ELSvLCd+eva+++fs+tgklye++s
  RWR87859.1 10 RIENAASRQVTFSKRRNGLLKKAFELSVLCDVEVALMVFSPTGKLYEFAS 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MVRGKTQLRR IENAASRQVT FSKRRNGLLK KAFELSVLCD VEVALMVFSP TGKLYEFASA  60
GKSKQRLRAS ISLEKIVQIR TAFIAVRHSS PAGDHRAMPH VAGDREEQAA RLPFPNFCYR  120
TKSKEEGRQD PVGADVILTP TVQSNSSLTK STVRFQSQFS GPSRLRFALC FFLRTHVNEI  180
YKVNGVDCPF EELKKELIPD TMATKATTTG IKFEIKKFDC KINFGLWQRR MKNILIQQGI  240
KVALLGKEKK PEKIDAEEWA YIDERAMSSI EQYLSDEVIF NIMEEEFAKD L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-31MIKC_MADS family protein