PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87860.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37256.9 Da    PI: 10.2634
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.7e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien+  rqvtfskRrng+lKKA+ELSvLCd+eva++ifs+tg+lye+++
  RWR87860.1 10 RIENNASRQVTFSKRRNGLLKKAFELSVLCDVEVALMIFSPTGRLYEFAT 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MVRGKTQMRR IENNASRQVT FSKRRNGLLK KAFELSVLCD VEVALMIFSP TGRLYEFATA  60
GLVNEESTYW LARPSSQLAT VQWLHKPLAA HQDQSSRSQP FLQAIPIPQD LIHSSSTPTS  120
DFSPPVWDCA QLELLQKHLA GLIHLVRIKP SLANISVPPS NAWSDLFPPL KPPDPTLPIS  180
NPLSNLSVDQ LAQLLSLQPT SLVQVNHLAA NRNWLDLFPD SKPISPSNYP LSSLVDGQLT  240
MKIPSSMVEP SRNSFSNAAI GRILGKRPTV EWLTHHANFT WNLSKPCLIS LTNKGHFLFR  300
FSSKVDKDLA ISGSPYSLLN RKLHLLPWSR GQDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.18e-31MIKC_MADS family protein