PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87869.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 67aa    MW: 7540.85 Da    PI: 11.158
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.5e-301059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rien+  rqvtfskRrng+lKKA+ELSvLCd+eva+++fs+tg+lye++s
  RWR87869.1 10 RIENTASRQVTFSKRRNGLLKKAFELSVLCDVEVALMVFSPTGRLYEFAS 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    
MVRGKTQMRR IENTASRQVT FSKRRNGLLK KAFELSVLCD VEVALMVFSP TGRLYEFASA  60
GFPSLLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-34MIKC_MADS family protein